Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_0122Conserved hypothetical protein; Identified by similarity to PIR:AD2369. (108 aa)    
Predicted Functional Partners:
CYA_0121
Conserved hypothetical protein; Identified by similarity to GB:BAD78811.1.
 
     0.955
CYA_0123
Phycobilisome degradation family protein.
       0.773
CYA_0014
Identified by match to protein family HMM PF05419.
  
     0.769
CYA_0185
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.
  
     0.763
CYA_2406
Conserved hypothetical protein; Identified by similarity to GB:BAC88790.1; match to protein family HMM PF06799.
  
     0.763
psbW
Photosystem II reaction center protein PsbW; Identified by similarity to SP:Q55356; match to protein family HMM PF03912; Belongs to the Psb28 family.
  
     0.762
CYA_1247
Conserved hypothetical protein; Identified by match to protein family HMM PF06485.
  
     0.757
CYA_2736
Conserved hypothetical protein; Identified by similarity to PIR:AI1923; match to protein family HMM PF02325.
  
     0.754
psaE
Photosystem I reaction center subunit IV; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family.
  
     0.753
CYA_2036
Conserved hypothetical protein; Identified by similarity to GB:BAC91704.1.
  
     0.752
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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