Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_0153Peptide/opine/nickel uptake ABC transporter (PepT) family, ATP-binding protein; Identified by similarity to GB:AAC67221.1; match to protein family HMM PF00005. (224 aa)    
Predicted Functional Partners:
CYA_0152
Peptide/opine/nickel uptake ABC transporter (PepT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
0.998
CYA_0151
Peptide/opine/nickel ABC transporter (PepT) family, permease protein; Identified by similarity to SP:P26904; match to protein family HMM PF00528.
 
 0.997
CYA_0150
Peptide/opine/nickel ABC transporter (PepT) family, permease protein; Identified by similarity to SP:P42062; match to protein family HMM PF00528.
 
 
 0.996
CYA_0149
Peptide/opine/nickel ABC transporter (PepT) family, substrate-binding protein; Identified by match to protein family HMM PF00496.
 
 
 0.995
CYA_0051
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.
 
 0.978
CYA_2362
OppBC ABC transporter family, permease protein; Identified by similarity to SP:P42062; match to protein family HMM PF00528.
 
 
 0.976
CYA_0268
Peptide/opine/nickel ABC transporter (PepT) family, substrate-binding protein; Identified by match to protein family HMM PF00496.
 
 
 0.956
CYA_1893
Peptide/opine/nickel ABC transporter (PepT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 
0.927
CYA_0154
Putative permease; Identified by match to protein family HMM PF02687; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
       0.535
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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