Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CYA_0185Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. (504 aa)    
Predicted Functional Partners:
crtH
Carotenoid isomerase; Identified by similarity to GB:AAM71888.1; match to protein family HMM PF01266; match to protein family HMM TIGR02730.
 
 
 0.949
zds
Carotene 7,8-desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
  
 0.947
CYA_1931
Fatty acid desaturase; Identified by similarity to GB:AAF78203.1; match to protein family HMM PF00487.
   
 
 0.934
CYA_1571
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266.
  
  
 
0.922
CYA_0396
Conserved hypothetical protein; Identified by similarity to GB:BAC89907.1.
  
     0.765
CYA_0122
Conserved hypothetical protein; Identified by similarity to PIR:AD2369.
  
     0.763
CYA_0905
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.761
CYA_2406
Conserved hypothetical protein; Identified by similarity to GB:BAC88790.1; match to protein family HMM PF06799.
  
     0.757
CYA_2853
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
    0.757
CYA_1788
Prenyltransferase, UbiA family; Identified by match to protein family HMM PF01040.
 
  
 0.752
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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