Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
CYA_0189Trypsin domain lipoprotein; Identified by match to protein family HMM PF00089; match to protein family HMM PF05738. (418 aa)    
Predicted Functional Partners:
CYA_2656
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
    
 0.839
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 
 0.815
CYA_0212
Identified by match to protein family HMM PF00481.
  
 
 
 0.775
CYA_0232
Peptidase inhibitor, I4 family; Identified by match to protein family HMM PF00079; Belongs to the serpin family.
 
 
 0.758
CYA_2401
Peptidase, S8A (subtilisin) family; Identified by similarity to GB:AAD48483.1; match to protein family HMM PF00082.
 
 0.630
CYA_1968
Identified by match to protein family HMM PF01835; match to protein family HMM PF07703.
  
 
 0.613
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
 
   0.611
rpsU
Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family.
       0.547
CYA_0211
Identified by match to protein family HMM PF00850.
    
  0.514
CYA_0576
Identified by match to protein family HMM PF00850.
    
  0.514
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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