STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0189Trypsin domain lipoprotein; Identified by match to protein family HMM PF00089; match to protein family HMM PF05738. (418 aa)    
Predicted Functional Partners:
CYA_1968
Identified by match to protein family HMM PF01835; match to protein family HMM PF07703.
  
 
 0.910
CYA_0232
Peptidase inhibitor, I4 family; Identified by match to protein family HMM PF00079; Belongs to the serpin family.
 
 
 0.825
CYA_2401
Peptidase, S8A (subtilisin) family; Identified by similarity to GB:AAD48483.1; match to protein family HMM PF00082.
 
 
 0.776
CYA_2656
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
    
 0.762
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 
 0.635
dnaK-1
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
 
 0.618
CYA_0343
Identified by match to protein family HMM PF00012; Belongs to the heat shock protein 70 family.
    
 
 0.618
dnaK-2
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
 
 0.618
rpsU
Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family.
       0.547
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.