STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0199Prepilin-type N-terminal cleavage/methylation domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532. (254 aa)    
Predicted Functional Partners:
CYA_0198
pddD domain protein; Identified by similarity to SP:Q00517; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
     0.912
CYA_0200
Conserved domain protein.
 
     0.910
CYA_0197
Putative pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
     0.883
CYA_1965
Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157.
  
 
 0.752
pilC
Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.
  
  
 0.732
CYA_2101
Conserved hypothetical protein; Identified by similarity to PIR:AF1933.
  
     0.703
CYA_0123
Phycobilisome degradation family protein.
  
     0.684
CYA_0160
Conserved hypothetical protein; Identified by similarity to PIR:AB2317.
  
     0.683
CYA_0934
Conserved hypothetical protein; Identified by similarity to PIR:AI2367.
  
     0.661
CYA_2271
Conserved hypothetical protein; Identified by similarity to PIR:AI2367.
  
     0.627
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.