STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0224Hydrophobic amino acid uptake ABC transporter (HAAT) family, amino acid-binding protein; Identified by match to protein family HMM PF01094. (466 aa)    
Predicted Functional Partners:
CYA_2478
Hydrophobic amino acid ABC transporter (HAAT) family, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.989
CYA_2479
Hydrophobic amino acid ABC transporter (HAAT) family, permease protein; Identified by similarity to SP:P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.987
CYA_2622
Hydrophobic amino acid ABC transporter (HAAT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.981
CYA_2623
Hydrophobic amino acid ABC transporter (HAAT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.976
CYA_2621
Hydrophobic amino acid ABC transporter (HAAT) family, amino acid-binding protein; Identified by similarity to SP:P21175; match to protein family HMM PF01094; match to protein family HMM TIGR01409.
  
  
 
0.928
CYA_1922
Urea ABC transporter, permease protein; Identified by similarity to GB:CAB70950.1; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.750
CYA_1923
Urea ABC transporter, permease protein; Identified by similarity to GB:CAB70949.1; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.748
trpA-1
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.610
gltS
Ferredoxin-dependent glutamate synthase; Identified by similarity to SP:P55038; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
     
 0.534
CYA_1920
Urea ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.531
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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