Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gvpGGas vesicle protein G; Identified by match to protein family HMM PF05120. (81 aa)    
Predicted Functional Partners:
gvpN
Gas vesicle protein GvpN; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728; match to protein family HMM TIGR02640.
 
   
 0.938
gvpJ
Gas vesicle protein J; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
   
 0.933
CYA_1230
Gas vesicle protein, GvpL/GvpF family; Identified by similarity to SP:P55149; match to protein family HMM PF06386.
 
   
 0.913
gvpA
Gas vesicle protein A; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
   
 0.910
gvpW
Gas vesicle protein W; Identified by similarity to GB:CAE11909.1.
 
   
 0.877
CYA_1104
Arsenite-antimonite (ArsAB) efflux family transporter, ATP-binding protein; Identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345.
 
     0.692
CYA_0590
Conserved domain protein.
  
     0.598
CYA_2809
ATPase, AAA family; Identified by match to protein family HMM PF00004; Belongs to the AAA ATPase family.
 
     0.573
CYA_0231
Conserved hypothetical protein; Identified by similarity to GB:BAC89072.1.
       0.566
CYA_0229
Hypothetical protein; Identified by Glimmer2; putative.
       0.559
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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