Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_0231Conserved hypothetical protein; Identified by similarity to GB:BAC89072.1. (205 aa)    
Predicted Functional Partners:
CYA_0748
Conserved hypothetical protein.
  
     0.773
ndhO
Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.773
CYA_0965
Conserved hypothetical protein.
  
     0.772
CYA_1595
CO2 hydration protein; Identified by match to protein family HMM TIGR01964.
  
     0.771
rpoZ
Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.768
CYA_0162
Conserved hypothetical protein; Identified by similarity to PIR:AB2066.
  
     0.768
CYA_0638
CO2 hydration protein; Identified by match to protein family HMM TIGR01964.
  
     0.768
CYA_2630
Identified by match to protein family HMM PF00034.
  
     0.767
CYA_1384
Conserved hypothetical protein; Identified by similarity to GB:BAC09596.1.
  
     0.763
CYA_2650
Tetratricopeptide repeat protein.
  
     0.762
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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