Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_0258Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266. (370 aa)    
Predicted Functional Partners:
psbY
Photosystem II protein PsbY; Manganese-binding polypeptide with L-arginine metabolizing enzyme activity. Component of the core of photosystem II. Belongs to the PsbY family.
       0.668
CYA_0260
Hypothetical protein; Identified by Glimmer2; putative.
       0.668
CYA_0043
Amine oxidase, flavin-containing; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.
  
     0.553
phrB-1
Deoxyribodipyrimidine photolyase; Identified by match to protein family HMM PF00875; match to protein family HMM PF03441; match to protein family HMM TIGR02765; Belongs to the DNA photolyase family.
 
     0.476
CYA_1082
Identified by match to protein family HMM PF04244.
 
     0.475
phrB-2
Deoxyribodipyrimidine photolyase; Identified by similarity to SP:P05327; match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family.
 
     0.432
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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