CYA_0289 protein (Synechococcus sp. JA33Ab) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CYA_0289

Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008. (102 aa)

Predicted Functional Partners:

petH

0.971

petE

0.953

petJ

0.916

CYA_1840

0.913

CYA_1426

0.909

CYA_0027

0.905

nifU

0.904

CYA_0290

0.773

CYA_0291

0.641

CYA_0288

0.576

Your Current Organism:

Synechococcus sp. JA33Ab

NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYA_0027	CYA_0289	CYA_0027	CYA_0289	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	0.905
CYA_0027	CYA_1426	CYA_0027	CYA_1426	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	0.909
CYA_0027	CYA_1840	CYA_0027	CYA_1840	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	0.912
CYA_0027	nifU	CYA_0027	CYA_1825	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.	0.904
CYA_0027	petE	CYA_0027	CYA_1602	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Plastocyanin; Identified by similarity to SP:Q51883; match to protein family HMM PF00127; match to protein family HMM TIGR02656.	0.951
CYA_0027	petH	CYA_0027	CYA_1257	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	ferredoxin--NADP reductase; Identified by similarity to SP:P00454; match to protein family HMM PF00175.	0.971
CYA_0027	petJ	CYA_0027	CYA_2330	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Cytochrome c6; Identified by similarity to SP:P28596; match to protein family HMM PF00034.	0.932
CYA_0288	CYA_0289	CYA_0288	CYA_0289	Hypothetical protein; Identified by Glimmer2; putative.	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	0.576
CYA_0288	CYA_0290	CYA_0288	CYA_0290	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by similarity to GB:BAD80164.1.	0.576
CYA_0288	CYA_0291	CYA_0288	CYA_0291	Hypothetical protein; Identified by Glimmer2; putative.	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.475
CYA_0289	CYA_0027	CYA_0289	CYA_0027	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	0.905
CYA_0289	CYA_0288	CYA_0289	CYA_0288	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Hypothetical protein; Identified by Glimmer2; putative.	0.576
CYA_0289	CYA_0290	CYA_0289	CYA_0290	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Conserved hypothetical protein; Identified by similarity to GB:BAD80164.1.	0.773
CYA_0289	CYA_0291	CYA_0289	CYA_0291	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.641
CYA_0289	CYA_1426	CYA_0289	CYA_1426	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	0.909
CYA_0289	CYA_1840	CYA_0289	CYA_1840	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	0.913
CYA_0289	nifU	CYA_0289	CYA_1825	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.	0.904
CYA_0289	petE	CYA_0289	CYA_1602	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Plastocyanin; Identified by similarity to SP:Q51883; match to protein family HMM PF00127; match to protein family HMM TIGR02656.	0.953
CYA_0289	petH	CYA_0289	CYA_1257	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	ferredoxin--NADP reductase; Identified by similarity to SP:P00454; match to protein family HMM PF00175.	0.971
CYA_0289	petJ	CYA_0289	CYA_2330	Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.	Cytochrome c6; Identified by similarity to SP:P28596; match to protein family HMM PF00034.	0.916

page 1 of 4

Server load: low (10%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About