Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pdsPhytoene desaturase; Identified by similarity to SP:P26294; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02731. (472 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase; Identified by similarity to SP:P37294; match to protein family HMM PF00494.
  
 0.990
CYA_2799
Identified by match to protein family HMM PF07298.
  
  
 0.978
zds
Carotene 7,8-desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
  
0.916
crtH
Carotenoid isomerase; Identified by similarity to GB:AAM71888.1; match to protein family HMM PF01266; match to protein family HMM TIGR02730.
 
   
 0.789
CYA_0383
Conserved hypothetical protein; Identified by similarity to PIR:S75306; match to protein family HMM PF07082.
  
     0.772
psbO
Photosystem II manganese-stabilizing protein; Identified by similarity to SP:P55221; match to protein family HMM PF01716.
  
     0.772
CYA_0694
Conserved hypothetical protein.
  
     0.760
CYA_0712
Conserved hypothetical protein; Identified by similarity to PIR:AF2149.
  
     0.760
CYA_0848
BNR/Asp-box repeat protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.
  
     0.758
CYA_1247
Conserved hypothetical protein; Identified by match to protein family HMM PF06485.
  
     0.748
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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