Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYA_03242',5' RNA ligase family protein; Identified by match to protein family HMM PF02834. (200 aa)    
Predicted Functional Partners:
cinA
Competence/damage-inducible protein CinA; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.
     
 0.703
CYA_1400
Conserved hypothetical protein.
  
     0.641
CYA_0633
Conserved hypothetical protein; Identified by similarity to PIR:AB2412.
  
     0.614
CYA_2515
Conserved hypothetical protein; Identified by similarity to PIR:AI2386.
  
     0.580
CYA_2101
Conserved hypothetical protein; Identified by similarity to PIR:AF1933.
  
     0.548
CYA_2211
Conserved hypothetical protein.
 
     0.542
CYA_2237
Conserved hypothetical protein; Identified by similarity to GB:BAC07624.1.
  
     0.541
CYA_0327
Ferredoxin-like protein; Identified by similarity to PIR:JC7085.
       0.513
CYA_0805
Conserved hypothetical protein; Identified by similarity to PIR:AD1913.
  
     0.504
CYA_2197
Identified by match to protein family HMM PF01957.
  
     0.460
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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