STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0334Conserved hypothetical protein; Identified by similarity to PIR:AC2464; match to protein family HMM PF05685. (304 aa)    
Predicted Functional Partners:
CYA_2480
Putative lipoprotein.
  
     0.693
CYA_2251
Conserved domain protein.
  
     0.690
CYA_2543
Conserved hypothetical protein; Identified by similarity to GB:BAC88877.1; match to protein family HMM PF05685.
  
     0.684
CYA_2340
Conserved hypothetical protein.
  
     0.647
csx3
CRISPR-associated protein, Csx3 family; Identified by match to protein family HMM TIGR02579.
  
     0.633
lysS
lysyl-tRNA synthetase; Identified by match to protein family HMM PF00152; match to protein family HMM PF00587; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.628
CYA_2548
CRISPR-associated protein, TM1812 family; Identified by match to protein family HMM TIGR02221; match to protein family HMM TIGR02549.
  
     0.622
CYA_2248
Conserved hypothetical protein, truncation.
  
     0.603
CYA_0942
Conserved hypothetical protein; Identified by similarity to PIR:AH2253.
  
     0.601
CYA_1912
Conserved hypothetical protein; Identified by similarity to GB:AAQ63052.1; match to protein family HMM PF05685.
  
     0.598
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.