STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0352NADPH-dependent FMN reductase; Identified by match to protein family HMM PF03358. (183 aa)    
Predicted Functional Partners:
cysH
Phosophoadenylyl-sulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
  
 
 0.934
ribF
Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.
    
 0.908
sir
Sulfite reductase, ferredoxin dependent; Identified by similarity to SP:P30008; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02042; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
 
 0.904
ntrC-2
Nitrate ABC transporter, ATP-binding protein NtrC; Identified by similarity to SP:P38045; match to protein family HMM PF00005; match to protein family HMM TIGR01184.
 
  
 0.612
ntrC-1
Nitrate ABC transporter, ATP-binding protein NtrC; Identified by similarity to SP:P73450; match to protein family HMM PF00005; match to protein family HMM TIGR01184.
  
  
 0.557
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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