Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0367Identified by match to protein family HMM PF00903. (147 aa)    
Predicted Functional Partners:
CYA_2889
TM2 domain protein; Identified by match to protein family HMM PF05154.
  
     0.736
CYA_2761
Conserved hypothetical protein; Identified by similarity to PIR:S74966.
  
     0.707
CYA_1251
Conserved hypothetical protein.
  
     0.663
CYA_1317
Conserved hypothetical protein.
  
     0.639
CYA_0123
Phycobilisome degradation family protein.
  
     0.615
CYA_2196
Conserved hypothetical protein; Identified by similarity to PIR:AD2437.
  
     0.611
CYA_1617
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.594
CYA_2028
Conserved domain protein.
  
     0.586
CYA_1590
Conserved hypothetical protein.
 
  
 0.580
CYA_1950
Conserved hypothetical protein.
 
     0.575
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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