STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0396Conserved hypothetical protein; Identified by similarity to GB:BAC89907.1. (247 aa)    
Predicted Functional Partners:
CYA_0394
Conserved hypothetical protein.
     
 0.794
CYA_0185
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.
  
     0.765
CYA_1202
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
 
 
 0.753
CYA_2245
Conserved hypothetical protein; Identified by similarity to GB:BAC90426.1.
 
     0.751
CYA_0122
Conserved hypothetical protein; Identified by similarity to PIR:AD2369.
  
     0.750
CYA_0121
Conserved hypothetical protein; Identified by similarity to GB:BAD78811.1.
  
     0.748
CYA_1788
Prenyltransferase, UbiA family; Identified by match to protein family HMM PF01040.
  
 
   0.744
thf1
Conserved hypothetical protein; May be involved in photosynthetic membrane biogenesis.
  
   
 0.738
CYA_1247
Conserved hypothetical protein; Identified by match to protein family HMM PF06485.
  
     0.733
CYA_1001
Conserved hypothetical protein; Identified by similarity to PIR:AE2255.
  
     0.727
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.