Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CYA_0403 | CYA_0404 | CYA_0403 | CYA_0404 | ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. | Conserved hypothetical protein. | 0.522 |
| CYA_0403 | CYA_1111 | CYA_0403 | CYA_1111 | ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. | Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | 0.551 |
| CYA_0403 | CYA_1211 | CYA_0403 | CYA_1211 | ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. | Putative permease, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | 0.549 |
| CYA_0403 | CYA_1235 | CYA_0403 | CYA_1235 | ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. | Putative lipoprotein. | 0.518 |
| CYA_0403 | CYA_1236 | CYA_0403 | CYA_1236 | ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.493 |
| CYA_0403 | CYA_1255 | CYA_0403 | CYA_1255 | ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. | Hypothetical protein; Identified by Glimmer2; putative. | 0.613 |
| CYA_0403 | CYA_1393 | CYA_0403 | CYA_1393 | ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. | TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | 0.554 |
| CYA_0403 | CYA_2458 | CYA_0403 | CYA_2458 | ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. | Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | 0.623 |
| CYA_0403 | CYA_2793 | CYA_0403 | CYA_2793 | ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.495 |
| CYA_0403 | lpxB | CYA_0403 | CYA_1961 | ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. | lipid-A-disaccharide synthetase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.513 |
| CYA_0404 | CYA_0403 | CYA_0404 | CYA_0403 | Conserved hypothetical protein. | ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. | 0.522 |
| CYA_1111 | CYA_0403 | CYA_1111 | CYA_0403 | Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. | 0.551 |
| CYA_1111 | CYA_1211 | CYA_1111 | CYA_1211 | Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | Putative permease, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | 0.926 |
| CYA_1111 | CYA_1235 | CYA_1111 | CYA_1235 | Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | Putative lipoprotein. | 0.749 |
| CYA_1111 | CYA_1236 | CYA_1111 | CYA_1236 | Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.771 |
| CYA_1111 | CYA_1393 | CYA_1111 | CYA_1393 | Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | 0.489 |
| CYA_1111 | CYA_2458 | CYA_1111 | CYA_2458 | Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | 0.934 |
| CYA_1111 | lpxB | CYA_1111 | CYA_1961 | Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | lipid-A-disaccharide synthetase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.761 |
| CYA_1211 | CYA_0403 | CYA_1211 | CYA_0403 | Putative permease, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. | 0.549 |
| CYA_1211 | CYA_1111 | CYA_1211 | CYA_1111 | Putative permease, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739. | 0.926 |
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