Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_0435Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (427 aa)    
Predicted Functional Partners:
CYA_0434
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.991
CYA_2187
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
0.934
CYA_1518
Outer membrane efflux family protein; Identified by match to protein family HMM PF02321.
 
 
 0.904
CYA_1877
Transporter, membrane fusion protein (MFP) family; Identified by match to protein family HMM PF00529.
  
     0.726
devC
Probable glycolipid ABC exporter (DevE) family, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.
 
  
 0.642
CYA_2836
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.
  
  
 0.639
macB
Macrolide ABC transporter, permease protein; Identified by similarity to SP:P75831; match to protein family HMM PF02687.
 
  
 0.635
CYA_2155
Sensor histindine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
   
 0.479
CYA_0436
ISSoc6, orfB transposase; Identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766.
       0.462
CYA_1926
Transglycosylase, SLT family; Identified by match to protein family HMM PF01464; match to protein family HMM PF07719.
  
     0.432
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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