STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0436ISSoc6, orfB transposase; Identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766. (416 aa)    
Predicted Functional Partners:
CYA_0437
ISSoc6, orfA transposase; Identified by similarity to PIR:AD2227; match to protein family HMM PF01797.
  
    0.561
cas6
CRISPR-associated protein Cas6; Identified by match to protein family HMM TIGR01877.
  
     0.554
CYA_0123
Phycobilisome degradation family protein.
  
     0.544
CYA_2402
Conserved hypothetical protein.
  
     0.509
CYA_1934
Conserved hypothetical protein.
  
     0.507
CYA_0435
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.462
CYA_0540
Conserved hypothetical protein; Identified by similarity to PIR:AE2344.
  
     0.454
CYA_0382
Conserved hypothetical protein; Identified by similarity to PIR:AI2167.
  
     0.426
CYA_0366
Conserved hypothetical protein; Identified by similarity to PIR:AC2382.
  
     0.402
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.