Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CYA_0439Conserved hypothetical protein. (431 aa)    
Predicted Functional Partners:
CYA_0440
Conserved hypothetical protein.
       0.678
CYA_0441
Putative membrane protein; Identified by match to protein family HMM PF00892.
       0.678
CYA_0442
Conserved domain protein; Identified by similarity to GB:CAD14216.1.
       0.678
CYA_1601
Conserved hypothetical protein.
  
     0.609
CYA_0443
Hypothetical protein; Identified by Glimmer2; putative.
       0.518
CYA_2538
Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.
  
     0.440
cpcT1
Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
     0.428
CYA_0342
Conserved hypothetical protein; Identified by similarity to GB:BAC91744.1.
  
 
   0.427
CYA_0444
Peptidase, M8 (leishmanolysin) family.
       0.425
CYA_1970
Conserved hypothetical protein.
  
     0.424
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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