Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_0495Hypothetical protein; Identified by Glimmer2; putative. (213 aa)    
Predicted Functional Partners:
CYA_0494
Conserved hypothetical protein; Identified by similarity to PIR:AB2257.
       0.773
ccmK-1
Carbon dioxide concentrating mechanism protein CcmK; Identified by similarity to SP:Q03511; match to protein family HMM PF00936.
 
 
 
 0.700
ccmK-2
Carbon dioxide concentrating mechanism protein CcmK; Identified by similarity to SP:Q03511; match to protein family HMM PF00936.
 
 
 
 0.686
CYA_1616
Identified by match to protein family HMM PF00936.
 
 
 
 0.684
ccmL
Carbon dioxide concentrating mechanism protein CcmL; Identified by similarity to SP:P72759; match to protein family HMM PF03319.
 
 
 
 0.658
proA-2
Putative gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
       0.492
CYA_0447
D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase family protein; Identified by match to protein family HMM PF02779; match to protein family HMM PF03894.
  
     0.447
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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