Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_0576Identified by match to protein family HMM PF00850. (303 aa)    
Predicted Functional Partners:
CYA_0578
Conserved hypothetical protein.
       0.620
CYA_0212
Identified by match to protein family HMM PF00481.
  
   0.598
CYA_2656
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
   
 0.578
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
    
 0.562
CYA_0189
Trypsin domain lipoprotein; Identified by match to protein family HMM PF00089; match to protein family HMM PF05738.
    
  0.514
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
   0.501
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.497
CYA_2652
PBS lyase HEAT-like repeat protein; Identified by match to protein family HMM PF02985; match to protein family HMM PF03130.
    
 0.474
CYA_0042
WD domain, G-beta repeat protein; Identified by match to protein family HMM PF00400.
    
  0.468
CYA_0070
Conserved domain protein.
    
  0.468
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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