Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
CYA_0586GTP-binding protein domain; Identified by match to protein family HMM PF01926. (469 aa)    
Predicted Functional Partners:
CYA_1793
Conserved hypothetical protein.
  
     0.727
CYA_1061
Conserved hypothetical protein.
  
     0.716
CYA_1993
Conserved hypothetical protein.
  
     0.708
CYA_2000
Conserved hypothetical protein.
  
     0.680
CYA_2121
Conserved hypothetical protein; Identified by similarity to PIR:AB2162.
  
     0.666
CYA_0069
Conserved hypothetical protein; Identified by similarity to PIR:AH1812.
  
     0.637
CYA_1241
Conserved hypothetical protein.
  
     0.628
CYA_0797
Conserved hypothetical protein.
  
     0.618
CYA_2195
Transcriptional regulator, AbrB family; Identified by match to protein family HMM TIGR01439.
  
     0.605
CYA_2381
Site-specific recombinase, resolvase family; Identified by match to protein family HMM PF07508.
  
     0.605
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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