Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_0609Conserved hypothetical protein, truncation; Identified by similarity to PIR:AH2183. (121 aa)    
Predicted Functional Partners:
CYA_0896
Putative tocopherol cyclase.
  
     0.738
CYA_0654
Putative tocopherol cyclase; Identified by similarity to SP:Q94FY7.
  
     0.732
CYA_0185
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.
  
     0.715
CYA_1788
Prenyltransferase, UbiA family; Identified by match to protein family HMM PF01040.
  
     0.683
CYA_2771
Conserved hypothetical protein; Identified by similarity to PIR:AD1978.
  
     0.678
CYA_2463
Conserved hypothetical protein; Identified by similarity to PIR:AB1982.
  
     0.651
CYA_0663
ICE-like protease (caspase) p20 domain protein; Identified by match to protein family HMM PF00656; match to protein family HMM TIGR01409.
  
     0.642
petE
Plastocyanin; Identified by similarity to SP:Q51883; match to protein family HMM PF00127; match to protein family HMM TIGR02656.
  
     0.619
CYA_1487
Conserved hypothetical protein.
  
     0.605
CYA_0905
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.595
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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