Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_0621Conserved hypothetical protein; Identified by similarity to GB:BAD78799.1; match to protein family HMM TIGR02664. (163 aa)    
Predicted Functional Partners:
narB
Nitrate reductase; Identified by similarity to SP:P73448; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
 0.756
CYA_0867
Conserved hypothetical protein; Identified by similarity to GB:BAC10003.1.
  
     0.666
CYA_1595
CO2 hydration protein; Identified by match to protein family HMM TIGR01964.
  
     0.639
CYA_1061
Conserved hypothetical protein.
  
     0.601
CYA_0722
Conserved hypothetical protein; Identified by similarity to GB:BAC09253.1.
  
     0.596
CYA_1793
Conserved hypothetical protein.
  
     0.583
CYA_0570
Conserved hypothetical protein; Identified by similarity to GB:BAC09020.1.
  
     0.579
CYA_2195
Transcriptional regulator, AbrB family; Identified by match to protein family HMM TIGR01439.
  
     0.574
CYA_0898
Identified by match to protein family HMM PF06967.
  
     0.571
CYA_1590
Conserved hypothetical protein.
  
     0.562
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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