Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_0633Conserved hypothetical protein; Identified by similarity to PIR:AB2412. (156 aa)    
Predicted Functional Partners:
CYA_2515
Conserved hypothetical protein; Identified by similarity to PIR:AI2386.
  
     0.774
aat
leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
       0.727
CYA_1400
Conserved hypothetical protein.
  
     0.724
CYA_0839
Conserved hypothetical protein; Identified by similarity to GB:BAD79475.1.
  
     0.690
CYA_1916
Putative adenosine deaminase; Identified by match to protein family HMM PF00962.
  
     0.689
CYA_2197
Identified by match to protein family HMM PF01957.
  
     0.679
CYA_1843
Transcriptional regulator PatB; Identified by match to protein family HMM PF00037; match to protein family HMM PF01381.
  
     0.622
CYA_2101
Conserved hypothetical protein; Identified by similarity to PIR:AF1933.
  
     0.615
CYA_0324
2',5' RNA ligase family protein; Identified by match to protein family HMM PF02834.
  
     0.614
CYA_1190
Conserved hypothetical protein.
  
     0.612
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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