Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0658Conserved hypothetical protein; Identified by similarity to PIR:AD2411; match to protein family HMM PF05685. (193 aa)    
Predicted Functional Partners:
clpP-2
Putative ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
       0.723
CYA_1912
Conserved hypothetical protein; Identified by similarity to GB:AAQ63052.1; match to protein family HMM PF05685.
  
     0.690
clpP1
Putative ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
       0.682
CYA_2251
Conserved domain protein.
  
     0.672
CYA_2543
Conserved hypothetical protein; Identified by similarity to GB:BAC88877.1; match to protein family HMM PF05685.
  
     0.665
CYA_1013
Conserved hypothetical protein; Identified by similarity to PIR:AH2105; match to protein family HMM PF05685.
  
     0.633
CYA_1539
Conserved hypothetical protein; Identified by match to protein family HMM PF05685.
  
     0.607
CYA_1540
Conserved hypothetical protein; Identified by similarity to GB:BAC91077.1; match to protein family HMM PF05685.
  
     0.607
CYA_2480
Putative lipoprotein.
  
     0.601
CYA_1728
Conserved hypothetical protein; Identified by similarity to GB:BAD70760.1; match to protein family HMM PF05685.
  
     0.598
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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