Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cpcT1Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. (218 aa)    
Predicted Functional Partners:
cpcS2
CpeS-like protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
 
   
 0.890
cpcE-2
Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.
 
   
 0.849
cpcA-1
Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502.
  
   
 0.848
cpcB-1
Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.
  
   
 0.846
cpcA-2
Phycocyanin, alpha subunit; Identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338.
  
   
 0.845
cpcB-2
Phycocyanin, beta subunit; Identified by similarity to SP:P07120; match to protein family HMM PF00502.
  
   
 0.845
apcB-2
Allophycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337.
  
   
 0.835
cpcF
Phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit; Identified by match to protein family HMM PF02985; match to protein family HMM PF03130.
 
   
 0.814
cpcE-1
Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF02985; match to protein family HMM PF03130.
 
   
 0.814
apcA
Allophycocyanin, alpha subunit; Identified by match to protein family HMM PF00502.
  
   
 0.802
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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