Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
CYA_0663ICE-like protease (caspase) p20 domain protein; Identified by match to protein family HMM PF00656; match to protein family HMM TIGR01409. (710 aa)    
Predicted Functional Partners:
CYA_2565
Conserved hypothetical protein.
  
     0.702
CYA_0754
Conserved hypothetical protein.
  
    0.675
CYA_1571
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266.
  
     0.668
CYA_0052
Conserved hypothetical protein; Identified by similarity to PIR:AE2426.
  
     0.667
CYA_1989
Sensor histidine kinase; Identified by match to protein family HMM PF02518.
  
     0.644
CYA_0609
Conserved hypothetical protein, truncation; Identified by similarity to PIR:AH2183.
  
     0.642
CYA_1572
Conserved hypothetical protein.
  
     0.633
CYA_2836
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.
 
 
 
 0.616
CYA_0138
Conserved hypothetical protein, truncation.
  
     0.594
CYA_0069
Conserved hypothetical protein; Identified by similarity to PIR:AH1812.
  
     0.593
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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