Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_0671D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF02557. (244 aa)    
Predicted Functional Partners:
CYA_0939
Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
     
 0.905
CYA_1072
Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
     
 0.905
CYA_0672
Antioxidant, AhpC/Tsa family; Identified by match to protein family HMM PF00578.
       0.648
CYA_0673
HD domain protein; Identified by match to protein family HMM PF01966.
       0.488
CYA_0669
Hypothetical protein; Identified by Glimmer2; putative.
       0.481
zds
Carotene 7,8-desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
       0.478
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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