STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0695Conserved hypothetical protein; Identified by similarity to PIR:AF2125. (78 aa)    
Predicted Functional Partners:
CYA_1190
Conserved hypothetical protein.
  
     0.751
CYA_2377
Conserved hypothetical protein; Identified by similarity to PIR:AH2287.
  
     0.722
CYA_1397
Conserved hypothetical protein.
  
     0.686
CYA_1493
DnaJ domain protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF07721.
  
     0.676
CYA_1184
Conserved domain protein.
  
     0.651
CYA_1986
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.651
CYA_1317
Conserved hypothetical protein.
  
     0.636
CYA_0503
Conserved hypothetical protein; Identified by similarity to GB:BAC91438.1.
  
     0.635
CYA_0973
Conserved hypothetical protein; Identified by match to protein family HMM PF04286.
  
     0.623
CYA_0839
Conserved hypothetical protein; Identified by similarity to GB:BAD79475.1.
  
     0.618
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.