STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cse4CRISPR-associated protein, Cse4 family; Identified by match to protein family HMM TIGR01869. (380 aa)    
Predicted Functional Partners:
cas5e
CRISPR-associated protein Cas5, Ecoli subtype; Identified by match to protein family HMM TIGR01868; match to protein family HMM TIGR02593.
 
 
 0.999
cse3
CRISPR-associated protein, Cse3 family; Identified by match to protein family HMM TIGR01907.
 
 
 0.998
cse1
CRISPR-associated protein, Cse1 family; Identified by match to protein family HMM TIGR02547.
 
 
 0.998
cse2
CRISPR-associated protein, Cse2 family; Identified by match to protein family HMM TIGR02548.
  
 
 0.995
cas3
CRISPR-associated helicase Cas3; Identified by match to protein family HMM PF00271; match to protein family HMM TIGR01587.
 
 
 0.992
cas1-1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.956
cas2-2
CRISPR-associated protein Cas2; Identified by match to protein family HMM TIGR01873.
 
  
 0.938
CYA_0736
Conserved hypothetical protein; Identified by similarity to GB:BAD01867.1.
       0.576
CYA_0737
ISSoc8, transposase, interruption-N.
       0.410
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.