STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0737ISSoc8, transposase, interruption-N. (238 aa)    
Predicted Functional Partners:
CYA_0739
ISSoc8, transposase, interruption-C; Identified by match to protein family HMM PF07282.
 
     0.792
CYA_2343
ISSoc1, transposase, truncation; Identified by match to protein family HMM PF07282.
 
     0.786
cas3
CRISPR-associated helicase Cas3; Identified by match to protein family HMM PF00271; match to protein family HMM TIGR01587.
       0.559
CYA_0736
Conserved hypothetical protein; Identified by similarity to GB:BAD01867.1.
       0.559
cse1
CRISPR-associated protein, Cse1 family; Identified by match to protein family HMM TIGR02547.
       0.535
cse2
CRISPR-associated protein, Cse2 family; Identified by match to protein family HMM TIGR02548.
       0.528
CYA_0003
Conserved hypothetical protein.
  
     0.523
CYA_0197
Putative pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
     0.498
CYA_0199
Prepilin-type N-terminal cleavage/methylation domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
     0.429
cse3
CRISPR-associated protein, Cse3 family; Identified by match to protein family HMM TIGR01907.
       0.410
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.