Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_0800K+ transporter, Trk family; Identified by similarity to GB:BAA32063.1; match to protein family HMM PF02386. (485 aa)    
Predicted Functional Partners:
CYA_0801
K+ transporter, Trk family; Identified by match to protein family HMM PF01210; match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF03446.
 
 
 0.989
CYA_1268
Transporter, monovalent cation:proton antiporter-2 (CPA2) family; Identified by match to protein family HMM PF00999.
  
 
 0.878
CYA_0923
Transporter, monovalent cation:proton antiporter-2 (CPA2) family; Identified by match to protein family HMM PF00999; match to protein family HMM PF02254; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.832
CYA_2106
TrkA domain protein; Identified by match to protein family HMM PF02254.
  
 
 0.710
CYA_1599
Potassium transporter, voltage-gated ion channel (VIC) family; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885.
 
 
 0.624
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
     
 0.570
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.556
CYA_0358
Cation transporter, voltage-gated ion channel (VIC) family; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885.
  
 
 0.548
CYA_0799
DRTGG domain protein; Identified by match to protein family HMM PF07085.
       0.445
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
     
 0.417
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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