Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0805Conserved hypothetical protein; Identified by similarity to PIR:AD1913. (110 aa)    
Predicted Functional Partners:
CYA_1388
Conserved hypothetical protein.
  
     0.755
CYA_0052
Conserved hypothetical protein; Identified by similarity to PIR:AE2426.
  
     0.742
CYA_0366
Conserved hypothetical protein; Identified by similarity to PIR:AC2382.
  
     0.741
CYA_2237
Conserved hypothetical protein; Identified by similarity to GB:BAC07624.1.
  
     0.736
CYA_1950
Conserved hypothetical protein.
  
     0.733
CYA_0494
Conserved hypothetical protein; Identified by similarity to PIR:AB2257.
  
     0.731
CYA_1986
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.731
CYA_0754
Conserved hypothetical protein.
  
     0.726
CYA_2396
Conserved hypothetical protein.
  
     0.718
CYA_2730
Conserved hypothetical protein.
  
     0.705
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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