STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0850FHA domain protein; Identified by match to protein family HMM PF00498. (136 aa)    
Predicted Functional Partners:
CYA_0069
Conserved hypothetical protein; Identified by similarity to PIR:AH1812.
  
     0.721
CYA_2562
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.693
CYA_0052
Conserved hypothetical protein; Identified by similarity to PIR:AE2426.
  
     0.684
CYA_0160
Conserved hypothetical protein; Identified by similarity to PIR:AB2317.
  
     0.677
CYA_2318
Conserved domain protein.
  
     0.672
CYA_0290
Conserved hypothetical protein; Identified by similarity to GB:BAD80164.1.
  
    0.663
CYA_2000
Conserved hypothetical protein.
  
     0.662
CYA_2673
DnaJ domain protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF07719.
 
     0.640
CYA_2160
CheW domain protein; Identified by match to protein family HMM PF01584.
  
     0.635
CYA_0834
V4R domain protein.
  
     0.613
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.