Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_0876CRISPR-associated RAMP protein; Identified by match to protein family HMM PF03787. (324 aa)    
Predicted Functional Partners:
CYA_0874
Putative CRISPR-associated RAMP protein; Identified by similarity to PIR:AC1990; match to protein family HMM PF03787; match to protein family HMM TIGR02581.
 
     0.955
crm2-1
CRISPR-associated protein, Crm2 family; Identified by match to protein family HMM TIGR01872; match to protein family HMM TIGR02577.
 
 
 0.937
csx10
CRISPR-associated RAMP protein, Csx10 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR02674.
 
    0.867
CYA_0881
CRISPR-associated RAMP protein; Identified by match to protein family HMM PF03787.
 
     0.867
CYA_0875
Conserved hypothetical protein; Identified by similarity to PIR:AD1990.
       0.812
CYA_0873
Conserved domain protein.
       0.807
cas6
CRISPR-associated protein Cas6; Identified by match to protein family HMM TIGR01877.
 
   
 0.778
CYA_0877
CRISPR-associated RAMP protein, SSO1426 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR02581.
 
    
0.769
CYA_0598
Conserved domain protein.
  
     0.706
CYA_2866
Conserved hypothetical protein; Identified by similarity to GB:BAC09541.1.
  
     0.652
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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