Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ntrD-2Nitrate ABC transporter, ATP-binding protein NtrD; Identified by similarity to SP:P38045; similarity to SP:P38046; match to protein family HMM PF00005; match to protein family HMM TIGR01184. (287 aa)    
Predicted Functional Partners:
ntrB-2
Nitrate ABC transporter, permease protein; Identified by similarity to GB:AAB86903.1; match to protein family HMM PF00528; match to protein family HMM TIGR01183.
 
 0.992
ntrC-2
Nitrate ABC transporter, ATP-binding protein NtrC; Identified by similarity to SP:P38045; match to protein family HMM PF00005; match to protein family HMM TIGR01184.
 
 
0.985
CYA_0894
Nitrate/nitrite/cyanate ABC transporter (NitT) family, substrate-binding protein; Identified by similarity to SP:P39660; similarity to GB:AAQ23048.1; match to protein family HMM TIGR01409.
 0.977
ntrB-1
Nitrate ABC transporter, permease protein NrtB; Identified by similarity to SP:P38044; match to protein family HMM PF00528; match to protein family HMM TIGR01183.
 
 
 0.940
nrtA
Nitrate ABC transporter, nitrate-binding protein NrtA; Identified by similarity to SP:P38043; match to protein family HMM TIGR01409.
 
 0.923
CYA_1329
ABC transporter, permease protein; Homologous to permease members of TCDB 3.A.1.17 The Taurine Uptake Transporter (TauT) Family (Similar to 3.A.1.12 and 3.A.1.16) and 3.A.1.16. The Nitrate/Nitrite/Cyanate Uptake Transporter (NitT) Family; identified by match to protein family HMM PF00528.
 
 0.780
macB
Macrolide ABC transporter, permease protein; Identified by similarity to SP:P75831; match to protein family HMM PF02687.
 
      0.751
ntrC-1
Nitrate ABC transporter, ATP-binding protein NtrC; Identified by similarity to SP:P73450; match to protein family HMM PF00005; match to protein family HMM TIGR01184.
  
 
 0.649
narB
Nitrate reductase; Identified by similarity to SP:P73448; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
   
 0.430
glnB
Nitrogen regulatory protein P-II; Identified by similarity to SP:P80016; match to protein family HMM PF00543; Belongs to the P(II) protein family.
    
 
 0.408
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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