Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
ntrB-2Nitrate ABC transporter, permease protein; Identified by similarity to GB:AAB86903.1; match to protein family HMM PF00528; match to protein family HMM TIGR01183. (275 aa)    
Predicted Functional Partners:
ntrC-2
Nitrate ABC transporter, ATP-binding protein NtrC; Identified by similarity to SP:P38045; match to protein family HMM PF00005; match to protein family HMM TIGR01184.
 
 0.999
ntrC-1
Nitrate ABC transporter, ATP-binding protein NtrC; Identified by similarity to SP:P73450; match to protein family HMM PF00005; match to protein family HMM TIGR01184.
 
 
 0.994
ntrD-2
Nitrate ABC transporter, ATP-binding protein NtrD; Identified by similarity to SP:P38045; similarity to SP:P38046; match to protein family HMM PF00005; match to protein family HMM TIGR01184.
 
 0.992
CYA_0894
Nitrate/nitrite/cyanate ABC transporter (NitT) family, substrate-binding protein; Identified by similarity to SP:P39660; similarity to GB:AAQ23048.1; match to protein family HMM TIGR01409.
 
 0.990
ntrD-1
Nitrate ABC transporter, ATP-binding protein NtrD; Identified by similarity to SP:P38046; match to protein family HMM PF00005; match to protein family HMM TIGR01184.
 
 
 0.940
nrtA
Nitrate ABC transporter, nitrate-binding protein NrtA; Identified by similarity to SP:P38043; match to protein family HMM TIGR01409.
 
 
 0.927
CYA_1328
ABC transporter, ATP-binding protein; Homologous to ATP-binding members of TCDB 3.A.1.16. The Nitrate/Nitrite/Cyanate Uptake Transporter (NitT) Family (Similar to 3.A.1.12 and 3.A.1.17) and 3.A.1.17. The Taurine Uptake Transporter (TauT) Family (Similar to 3.A.1.12 and 3.A.1.16); identified by match to protein family HMM PF00005.
 
 
 0.838
CYA_1064
NitT/TauT family ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.786
CYA_0527
Taurine uptake ABC transporter (TauT) family, substrate-binding protein.
  
 
 0.512
CYA_0944
Putative secreted protein; Identified by match to protein family HMM TIGR01409.
  
 
 0.512
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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