STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0909Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009. (250 aa)    
Predicted Functional Partners:
CYA_0906
Conserved hypothetical protein; Identified by similarity to PIR:AD2255.
       0.572
adhE
Aldehyde-alcohol dehydrogenase; Identified by similarity to SP:P17547; match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.478
CYA_2151
Phospholipase D/competence protein ComEA helix-hairpin-helix domain protein; Identified by match to protein family HMM PF00614; match to protein family HMM PF00633; match to protein family HMM TIGR00426.
     
 0.424
CYA_1370
Putative sn-glycerol-3-phosphate ABC transporter, permease protein; Identified by similarity to SP:P10906; match to protein family HMM PF00528.
 
  
 0.422
ugpB
Glycerol-3-phosphate ABC transporter, glycerol-3-phosphate binding protein; Identified by similarity to SP:P10904; match to protein family HMM PF01547; match to protein family HMM TIGR01409.
 
  
 0.406
upgA
Glycerol-3-phosphate ABC transporter, permease protein; Identified by similarity to SP:P10905; match to protein family HMM PF00528.
 
  
 0.402
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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