Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_0920Conserved hypothetical protein; Identified by similarity to PIR:AB2462. (361 aa)    
Predicted Functional Partners:
rbcX
Chaperon-like protein RbcX; Identified by match to protein family HMM PF02341.
  
 
   0.965
cbbL
Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.
    
 
 0.939
rca
Ribulose bisphosphate carboxylase/oxygenase activase; Identified by similarity to SP:Q06721; match to protein family HMM PF00004; match to protein family HMM PF00101.
  
 
   0.782
CYA_0214
Conserved hypothetical protein.
  
     0.774
CYA_2892
Conserved hypothetical protein.
  
     0.773
CYA_2204
Conserved hypothetical protein.
  
     0.771
CYA_0898
Identified by match to protein family HMM PF06967.
  
     0.765
CYA_0454
Identified by match to protein family HMM TIGR02652.
  
     0.764
CYA_1833
Identified by match to protein family HMM PF06967.
  
     0.764
CYA_0570
Conserved hypothetical protein; Identified by similarity to GB:BAC09020.1.
  
     0.761
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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