Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CYA_0924FG-GAP repeat/ASPIC/UnbV domain protein; Identified by match to protein family HMM PF01839; match to protein family HMM PF07593. (454 aa)    
Predicted Functional Partners:
CYA_0408
Heme oxygenase; Identified by match to protein family HMM PF01126.
  
     0.649
CYA_2219
Putative arylamine N-acetyltransferase, truncation; Identified by similarity to GB:BAB51429.1; Belongs to the arylamine N-acetyltransferase family.
  
     0.635
CYA_2525
Putative lipoprotein.
  
     0.626
CYA_2827
Identified by match to protein family HMM PF00149.
  
     0.625
CYA_2222
Putative N-hydroxyarylamine O-acetyltransferase, truncation; Identified by similarity to GB:CAF05656.1.
  
     0.570
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
       0.549
CYA_2481
Sulfatase; Identified by similarity to GB:AAF72520.1; match to protein family HMM PF00884.
  
     0.457
CYA_1393
TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
  
 
 0.442
CYA_2574
Conserved hypothetical protein; Identified by similarity to PIR:H90201.
  
     0.401
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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