Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CYA_0930CbiX family protein; Identified by similarity to SP:O87690; match to protein family HMM PF01903. (299 aa)    
Predicted Functional Partners:
cobI
Precorrin-2 C20-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01467; Belongs to the precorrin methyltransferase family.
 
  
 0.950
cbiX
Sirohydrochlorin cobaltochelatase; Identified by similarity to SP:O87690; similarity to SP:Q55451; match to protein family HMM PF01903.
  
  
 
0.928
cobA
uroporphyrin-III C-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family.
  
  
 0.785
cbiG/cobJ-2
cbiG protein/precorrin-3B C17-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466.
 
   
 0.761
cbiG/cobJ-1
cbiG protein/precorrin-3B C17-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466; match to protein family HMM TIGR02467.
 
   
 0.760
cbiE/cbiT
precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiE/T subunits; Identified by match to protein family HMM PF00590; match to protein family HMM PF02390; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469.
 
   
 0.754
cobA/hemD
uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase; Identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family.
  
  
 0.698
CYA_0928
Putative membrane protein.
       0.580
CYA_0931
L-asparaginase, thermolabile; Identified by match to protein family HMM PF06089.
       0.572
cobH-2
precorrin-8X methylmutase; Identified by similarity to GB:CAA04310.1; match to protein family HMM PF02570.
 
   
 0.515
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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