Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CYA_0938FHA domain protein; Identified by match to protein family HMM PF00498. (120 aa)    
Predicted Functional Partners:
CYA_2836
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.
  
 
 0.818
CYA_0069
Conserved hypothetical protein; Identified by similarity to PIR:AH1812.
  
     0.725
CYA_2562
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.714
CYA_2000
Conserved hypothetical protein.
  
     0.713
CYA_0160
Conserved hypothetical protein; Identified by similarity to PIR:AB2317.
  
     0.704
CYA_0052
Conserved hypothetical protein; Identified by similarity to PIR:AE2426.
  
     0.702
CYA_2673
DnaJ domain protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF07719.
 
 
 
 0.700
CYA_2160
CheW domain protein; Identified by match to protein family HMM PF01584.
  
     0.683
CYA_0290
Conserved hypothetical protein; Identified by similarity to GB:BAD80164.1.
 
  
 0.680
CYA_1110
Identified by similarity to GB:BAC08389.1; match to protein family HMM PF00805.
 
    0.669
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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