STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0944Putative secreted protein; Identified by match to protein family HMM TIGR01409. (358 aa)    
Predicted Functional Partners:
CYA_1329
ABC transporter, permease protein; Homologous to permease members of TCDB 3.A.1.17 The Taurine Uptake Transporter (TauT) Family (Similar to 3.A.1.12 and 3.A.1.16) and 3.A.1.16. The Nitrate/Nitrite/Cyanate Uptake Transporter (NitT) Family; identified by match to protein family HMM PF00528.
 
  
 0.861
CYA_1328
ABC transporter, ATP-binding protein; Homologous to ATP-binding members of TCDB 3.A.1.16. The Nitrate/Nitrite/Cyanate Uptake Transporter (NitT) Family (Similar to 3.A.1.12 and 3.A.1.17) and 3.A.1.17. The Taurine Uptake Transporter (TauT) Family (Similar to 3.A.1.12 and 3.A.1.16); identified by match to protein family HMM PF00005.
 
    0.827
CYA_1736
Identified by match to protein family HMM PF01565.
  
     0.722
nadC
Nicotinate-nucleotide pyrophosphorylase; Identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; Belongs to the NadC/ModD family.
       0.568
CYA_1567
Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
  
     0.528
CYA_1538
Creatininase; Identified by match to protein family HMM PF02633.
 
     0.509
ntrB-1
Nitrate ABC transporter, permease protein NrtB; Identified by similarity to SP:P38044; match to protein family HMM PF00528; match to protein family HMM TIGR01183.
  
  
 0.413
ntrB-2
Nitrate ABC transporter, permease protein; Identified by similarity to GB:AAB86903.1; match to protein family HMM PF00528; match to protein family HMM TIGR01183.
  
  
 0.413
CYA_2491
Conserved hypothetical protein.
  
     0.410
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
Server load: medium (74%) [HD]