Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_0950Conserved hypothetical protein TIGR00299; Identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299; Belongs to the LarC family. (397 aa)    
Predicted Functional Partners:
CYA_0568
Identified by match to protein family HMM PF00733; match to protein family HMM PF01171; match to protein family HMM TIGR00268.
  
 0.922
CYA_1548
Circadian phase modifier CpmA-like protein; Identified by similarity to GB:AAD29318.1.
 
  
 0.912
CYA_2376
Identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Belongs to the SUA5 family.
     
 0.624
CYA_0949
Identified by match to protein family HMM PF00805.
       0.553
CYA_2321
Putative cobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891.
  
    0.465
CYA_0951
Peroxisomal fatty acyl CoA ABC transporter (P-FAT) family, transmembrane ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.438
gnd
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
       0.406
CYA_0392
Oxidoreductase, aldo/keto reductase family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00248.
 
    0.400
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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