Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_0953TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07721. (263 aa)    
Predicted Functional Partners:
CYA_1393
TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
 
 0.609
CYA_2577
Conserved hypothetical protein.
  
     0.558
CYA_1486
S-layer domain protein; Identified by match to protein family HMM PF00395.
  
     0.550
sir
Sulfite reductase, ferredoxin dependent; Identified by similarity to SP:P30008; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02042; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
       0.507
CYA_2892
Conserved hypothetical protein.
  
     0.498
CYA_0031
Conserved hypothetical protein; Identified by similarity to PIR:AC2234.
  
     0.495
rbcX
Chaperon-like protein RbcX; Identified by match to protein family HMM PF02341.
  
     0.494
CYA_2333
Protein kinase domain/TPR repeat protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.482
CYA_0920
Conserved hypothetical protein; Identified by similarity to PIR:AB2462.
  
     0.481
CYA_2079
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720.
  
   0.480
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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