STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0966Transcriptional regulator, Crp/Fnr family; Identified by match to protein family HMM PF00325. (221 aa)    
Predicted Functional Partners:
CYA_0964
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
 
    0.700
CYA_1617
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.684
CYA_1950
Conserved hypothetical protein.
  
     0.666
CYA_0197
Putative pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
     0.637
CYA_2462
Putative iron-sulfur cluster-binding protein; Identified by similarity to PIR:JC7085.
  
     0.636
CYA_1350
Conserved hypothetical protein.
  
     0.601
CYA_2730
Conserved hypothetical protein.
  
     0.593
CYA_2889
TM2 domain protein; Identified by match to protein family HMM PF05154.
  
     0.580
CYA_2046
Conserved hypothetical protein; Identified by similarity to PIR:AD1867.
  
 
 
 0.576
rpoZ
Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
   0.571
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.