STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_0975Putative S-layer protein; Identified by match to protein family HMM PF00395. (497 aa)    
Predicted Functional Partners:
CYA_2854
Polysaccharide pyruvyl transferase; Identified by match to protein family HMM PF04230.
  
     0.765
CYA_1077
Putative cell envelope-related function transcriptional attenuator; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350.
  
     0.611
CYA_1490
RNA polymerase sigma-70 factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
   0.545
CYA_1470
Conserved domain protein.
  
     0.538
CYA_1627
Peptidase, M23B family; Identified by match to protein family HMM PF01551.
  
    0.514
CYA_1509
Putative inorganic carbon transporter/0-antigen polymerase (ICT/OAP) family protein; Identified by match to protein family HMM PF04932.
  
     0.491
CYA_0974
Conserved hypothetical protein.
       0.483
tas
Aldo/keto reductase Tas; Identified by similarity to SP:Q46933; match to protein family HMM PF00248.
       0.437
CYA_0146
Glycosyl transferase, WecB/TagA/CpsF family; Identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; Belongs to the glycosyltransferase 26 family.
  
     0.409
CYA_2291
Conserved hypothetical protein; Identified by similarity to PIR:AB1961; match to protein family HMM PF03190.
    
   0.400
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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