Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tasAldo/keto reductase Tas; Identified by similarity to SP:Q46933; match to protein family HMM PF00248. (346 aa)    
Predicted Functional Partners:
CYA_0127
Conserved hypothetical protein; Identified by similarity to GB:BAB50217.1; match to protein family HMM PF04226.
   
  
 0.653
CYA_0977
Hypothetical protein; Identified by Glimmer2; putative.
       0.554
adhE
Aldehyde-alcohol dehydrogenase; Identified by similarity to SP:P17547; match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.469
CYA_0975
Putative S-layer protein; Identified by match to protein family HMM PF00395.
       0.437
psaF
Photosystem I reaction center subunit III; Identified by similarity to SP:P25899; match to protein family HMM PF02507.
      
 0.425
CYA_2315
<=42% ID to ATP binding proteins of the following ABC transporter families: 3.A.1.102. The Lipooligosaccharide Exporter (LOSE) Family, 3.A.1.105. The Drug Exporter-1 (DrugE1) Family and 3.A.1.211. The Cholesterol/Phospholipid/Retinal (CPR) Flippase Family (ABCA); identified by match to protein family HMM PF00005.
      
 0.425
CYA_2656
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
 
 
 
 0.413
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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